Index _ | A | B | C | D | E | F | G | H | I | J | L | M | N | O | P | Q | R | S | T | U | V | W _ __eq__() (Project method) __len__() (ConsolidatedPeak method) (ConsolidatedSearchResult method) A align_peaks() (in module libgunshotmatch.peak) align_projects() (in module libgunshotmatch.comparison) alignment (Method attribute) (Project attribute) AlignmentMethod (class in libgunshotmatch.method) ANDI (FileType attribute) area() (ConsolidatedPeak property) area_list (ConsolidatedPeak attribute) area_stdev() (ConsolidatedPeak property) average_hit_number() (ConsolidatedSearchResult property) average_ms_comparison() (ConsolidatedPeak property) B base_peak_filter (PeakFilterMethod attribute) base_peak_mass() (in module libgunshotmatch.peak) C cas (ConsolidatedSearchResult attribute) consolidate (Method attribute) consolidate() (in module libgunshotmatch.project) (Project method) consolidated_peaks (Project attribute) ConsolidatedPeak (class in libgunshotmatch.consolidate) ConsolidatedPeakFilter (class in libgunshotmatch.consolidate) ConsolidatedSearchResult (class in libgunshotmatch.consolidate) ConsolidateMethod (class in libgunshotmatch.method) create_alignment() (in module libgunshotmatch.utils) crop_mass_range (IntensityMatrixMethod attribute) D Datafile (class in libgunshotmatch.datafile) datafile (Repeat attribute) datafile_data (Project attribute) datafile_name (PeakList attribute) (QualifiedPeakList attribute) date_created (Datafile attribute) (Repeat attribute) date_modified (Datafile attribute) (Repeat attribute) degree (SavitzkyGolayMethod attribute) description (Datafile attribute) device (Datafile attribute) (Repeat attribute) E enable (SavitzkyGolayMethod attribute) export() (Datafile method) (Project method) (Repeat method) F filter() (ConsolidatedPeakFilter method) (InvertedFilter method) filter_aligned_peaks() (in module libgunshotmatch.peak) filter_alignment_to_consolidate() (in module libgunshotmatch.comparison.projects) (in module libgunshotmatch.comparison.unknowns) filter_peaks() (in module libgunshotmatch.peak) from_dict() (ConsolidatedPeak class method) (ConsolidatedSearchResult class method) (Datafile class method) (MethodBase class method) (Project class method) (QualifiedPeak class method) (Repeat class method) from_file() (Datafile class method) (Project class method) (Repeat class method) from_json() (Method class method) from_method() (ConsolidatedPeakFilter class method) from_peak() (QualifiedPeak class method) from_toml() (Method class method) G gap_penalty (AlignmentMethod attribute) GCMSDataInfo (namedtuple in libgunshotmatch.datafile) mz_range (namedtuple field) n_scans (namedtuple field) num_mz_mean (namedtuple field) num_mz_median (namedtuple field) rt_range (namedtuple field) time_step (namedtuple field) time_step_stdev (namedtuple field) get_info_from_gcms_data() (in module libgunshotmatch.datafile) get_padded_peak_list() (in module libgunshotmatch.comparison.projects) (in module libgunshotmatch.comparison.unknowns) get_padded_peak_lists() (in module libgunshotmatch.comparison) get_rt_range() (in module libgunshotmatch.utils) get_truncated_normal() (in module libgunshotmatch.utils) H hit_number_stdev() (ConsolidatedSearchResult property) hit_numbers (ConsolidatedSearchResult attribute) hits (ConsolidatedPeak attribute) (QualifiedPeak attribute) I identify_peaks() (in module libgunshotmatch.search) intensity_matrix (Datafile attribute) (Method attribute) IntensityMatrixMethod (class in libgunshotmatch.method) InvertedFilter (class in libgunshotmatch.consolidate) J JDX (FileType attribute) L libgunshotmatch.comparison module libgunshotmatch.comparison.projects module libgunshotmatch.comparison.unknowns module libgunshotmatch.consolidate module libgunshotmatch.datafile module libgunshotmatch.gzip_util module libgunshotmatch.method module libgunshotmatch.peak module libgunshotmatch.project module libgunshotmatch.search module libgunshotmatch.utils module load_gcms_data() (Datafile method) M mz_range (namedtuple field) GCMSDataInfo (namedtuple in libgunshotmatch.datafile) match_counter() (in module libgunshotmatch.consolidate) match_factor() (ConsolidatedSearchResult property) match_factor_stdev() (ConsolidatedSearchResult property) meta (ConsolidatedPeak attribute) Method (class in libgunshotmatch.method) MethodBase (class in libgunshotmatch.method) mf_list (ConsolidatedSearchResult attribute) min_appearances (ConsolidatedPeakFilter attribute) (ConsolidateMethod attribute) min_match_factor (ConsolidatedPeakFilter attribute) (ConsolidateMethod attribute) min_peak_area (AlignmentMethod attribute) min_peaks (AlignmentMethod attribute) MIT License, [1] module libgunshotmatch.comparison libgunshotmatch.comparison.projects libgunshotmatch.comparison.unknowns libgunshotmatch.consolidate libgunshotmatch.datafile libgunshotmatch.gzip_util libgunshotmatch.method libgunshotmatch.peak libgunshotmatch.project libgunshotmatch.search libgunshotmatch.utils ms_comparison (ConsolidatedPeak attribute) ms_comparison() (in module libgunshotmatch.utils) ms_comparison_stdev() (ConsolidatedPeak property) ms_list (ConsolidatedPeak attribute) MZML (FileType attribute) N n_scans (namedtuple field) GCMSDataInfo (namedtuple in libgunshotmatch.datafile) num_mz_mean (namedtuple field) GCMSDataInfo (namedtuple in libgunshotmatch.datafile) num_mz_median (namedtuple field) GCMSDataInfo (namedtuple in libgunshotmatch.datafile) name (ConsolidatedSearchResult attribute) (Datafile attribute) (Project attribute) name() (Repeat property) name_filter (ConsolidatedPeakFilter attribute) (ConsolidateMethod attribute) new() (Datafile class method) noise_filter (PeakFilterMethod attribute) noise_threshold (PeakFilterMethod attribute) O original_filename (Datafile attribute) original_filetype (Datafile attribute) P pairwise_ms_comparisons() (in module libgunshotmatch.consolidate) peak_detection (Method attribute) peak_filter (Method attribute) peak_from_dict() (in module libgunshotmatch.peak) peak_number (QualifiedPeak attribute) PeakDetectionMethod (class in libgunshotmatch.method) PeakFilterMethod (class in libgunshotmatch.method) PeakList (class in libgunshotmatch.peak) peaks (Repeat attribute) points (PeakDetectionMethod attribute) prepare_intensity_matrix() (Datafile method) print_skip_reason() (ConsolidatedPeakFilter method) (InvertedFilter method) Project (class in libgunshotmatch.project) Python Enhancement Proposals PEP 517 Q qualified_peaks (Repeat attribute) QualifiedPeak (class in libgunshotmatch.peak) QualifiedPeakList (class in libgunshotmatch.peak) R rt_range (namedtuple field) GCMSDataInfo (namedtuple in libgunshotmatch.datafile) read_gzip_json() (in module libgunshotmatch.gzip_util) reference_data (ConsolidatedSearchResult attribute) Repeat (class in libgunshotmatch.datafile) reverse_match_factor() (ConsolidatedSearchResult property) reverse_match_factor_stdev() (ConsolidatedSearchResult property) rmf_list (ConsolidatedSearchResult attribute) round_rt() (in module libgunshotmatch.utils) rt() (ConsolidatedPeak property) rt_list (ConsolidatedPeak attribute) rt_modulation (AlignmentMethod attribute) rt_range (PeakFilterMethod attribute) rt_stdev() (ConsolidatedPeak property) S savitzky_golay (IntensityMatrixMethod attribute) SavitzkyGolayMethod (class in libgunshotmatch.method) scans (PeakDetectionMethod attribute) should_filter_peak() (ConsolidatedPeakFilter method) T time_step (namedtuple field) GCMSDataInfo (namedtuple in libgunshotmatch.datafile) time_step_stdev (namedtuple field) GCMSDataInfo (namedtuple in libgunshotmatch.datafile) to_dict() (ConsolidatedPeak method) (ConsolidatedSearchResult method) (Datafile method) (MethodBase method) (Project method) (QualifiedPeak method) (Repeat method) to_list() (PeakList method) (QualifiedPeakList method) to_toml() (Method method) top_n_peaks (AlignmentMethod attribute) tophat (IntensityMatrixMethod attribute) tophat_structure_size (IntensityMatrixMethod attribute) U user (Datafile attribute) (Repeat attribute) V verbose (ConsolidatedPeakFilter attribute) version (Datafile attribute) (Repeat attribute) W window (SavitzkyGolayMethod attribute) write_alignment() (in module libgunshotmatch.peak) write_gzip_json() (in module libgunshotmatch.gzip_util)